Postdoctoral Researcher Marta Kulik
EDUCATION
| 2017 | Ph.D. (Chemistry) Laboratory of Crystalochemistry, Faculty of Chemistry and Centre of New Technologies, University of Warsaw, Poland |
| 2011 | B.A. (Chemistry) Laboratory of Radiochemistry, Faculty of Chemistry, University of Warsaw, Poland |
| 2010 | M.S. (Environmental Protection) Faculty of Biology and Faculty of Mathematics, Informatics and Mechanics (graduated with honours degree), University of Warsaw, Poland |
RESEARCH AND TEACHING EXPERIENCE
| 2017 – | Postdoctoral Researcher, RIKEN Theoretical Molecular Science Laboratory, Japan |
| 2016 – 2017 | JSPS Postdoctoral Fellow, RIKEN Theoretical Molecular Science Laboratory, Japan |
| 2011 – 2016 | Teaching assistance at Faculty of Chemistry, University of Warsaw, Poland (Identification of Organic Compounds, Physics A, Computer Science) |
FELLOWSHIPS/SCHOLARSHIPS
| 2013/2014 | KNOW scholarship at Faculty of Chemistry |
| 2011 – 2013 | Foundation for Polish Science PhD Fellowship, TEAM program |
| 2011 – 2014 | PhD Fellowship at Faculty of Chemistry |
| 2006 – 2011 | Student’s Scientific Scholarships, University of Warsaw |
AWARDS
| 2015 | Best Short Talk Award, Computational Advances in Structure-Based Drug Discovery, Lausanne, Switzerland |
| 2015 | Contributed Talk, 8th Symposium of the Polish Bioinformatics Society, Lublin, Poland |
| 2015 | Best Poster Award, Biomolecules and Nanostructures 5, Jaroszowice, Poland |
| 2015 | Conference Grant, 19th Annual International Conference on Research in Computational Molecular Biology, Warsaw, Poland |
| 2014 | Conference Grant for a PhD Student, IV EURO WG Conference on Operational Research in Computational Biology, Bioinformatics and Medicine, Poznan, Poland |
| 2014 | Contributed Talk Award, From Computational Biophysics to Systems Biology, Gdansk, Poland |
| 2013 | Conference Grant for a PhD Student, Computer Aided Drug Design, Gordon conference, Mount Snow, USA |
| 2013 | Best Poster Award, JCF Frühjahrssymposium, Berlin, Germany |
| 2011 | Best Bachelor Thesis in Nuclear Chemistry Award (Canberra Packard Sp. z o.o.) |
INTERNSHIPS
| 2016.1 – 2016.3 | Theoretical Molecular Science Laboratory, RIKEN, Japan |
| 2014.9 – 2014.12 | Theoretical Molecular Science Laboratory, RIKEN, Japan |
| 2010.9 | Municipal Chemical Laboratory, Warsaw, Poland |
| 2009.8 | Environmental Research Company, Warsaw, Poland |
CURRENT RESEARCH PROJECTS
- Replica Exchange Molecular Dynamics and Replica Exchange with Solute Tempering of nucleic acids
- Flexible Fitting of structures to Cryo-EM density
PUBLICATIONS
Peer Review Articles
- Acceleration of cryo-EM Flexible Fitting for Large Biomolecular Systems by Efficient Space Partitioning.
T. Mori, M. Kulik, O. Miyashita, J. Jung, F. Tama, Y. Sugita
Structure, 27, 161-174 (2019). - Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides.
M. Kulik, T. Mori, Y. Sugita, J. Trylska
Nucleic Acids Research, 46, 9960-9970 (2018). - Interactions of 2′-O-methyl Oligoribonucleotides with the RNA Models of the 30S Subunit A-site.
M. Jasiński, M. Kulik, M. Wojciechowska, R. Stolarski, J. Trylska
PLoS ONE,13, e0191138 (2018). - Helix 69 of Escherichia coli 23S ribosomal RNA as a peptide nucleic acid target.
M. Kulik, A. Markowska-Zagrajek, M. Wojciechowska, R. Grzela, T. Wituła, J. Trylska
Biochimie,138, 32-42 (2017) - Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site.
M. Kulik, J. Trylska
RAIRO-Oper. Res,50, 375-386 (2016) - Interactions of aminoglycoside antibiotics with rRNA.
J. Trylska, M. Kulik
Biochem. Soc. Trans., 4, 987-993. (2016) - Electrostatic Interactions in Aminoglycoside-RNA Complexes.
M. Kulik, A. M. Goral, M. Jasiński, P. M. Dominiak, J. Trylska
Biophysical Journal, 108, 655-665, (2015)
Publication featured on the front cover of the Journal. - Bis(L-serinium) oxalate dihydrate: polymorph II.
M. Kulik, A. Pazio, K. Wozniak
Acta Cryst., E69, o1667–o1668 (2013).